Creeks & Watersheds
Plants, Wildlife & Fish
Egret photo by Ginny Laughlin
  • Plants
  • Fish
  • Reptiles and Amphibians
  • Birds
  • Mammals

Plants

Marin County has a diverse mosaic of plant communities, ranging from forested Mt. Tamalpais, chaparral, grassy slopes, to ocean and bay marshes and beaches.

Mixed evergreen forests, riparian scrub/forest, chaparral, and grasslands are found on ridgetops and upper slopes around the county. Cooler north-facing slopes are likely to have conifers such as Douglas-fir and the iconic Coast Redwood, while warmer south-facing slopes tend to be drier, with more live oaks and bays, interspersed with chaparral and grasslands. Native shrubs include toyon (California holly), and ceanothus (California lilac).

Historically, Marin supported native grasslands of perennial bunchgrasses and annual wildflowers, but these areas are now dominated by Mediterranean annual grass species or have been converted to residential and commercial development. Nonetheless, native wildflowers such as wild hyacinth, iris, owl's clover, and goldfields can be found in spring. California’s state grass, purple needlegrass, is a native perennial bunchgrass that can be found here; its extensive root system can grow 20 feet deep, helping to prevent soil erosion. In the valleys, willow, alder, big- leaf maple, Oregon ash, box-elder, and California pipevine can be found along the creeks.

Tidal marshes at the edge of San Francisco Bay have been reduced significantly by development but good examples can still be found at Bothin Marsh, China Camp, and other areas along the bay. Salt marsh plants, such as saltgrass, pickleweed, and cordgrass, have adapted to the harsh environment of tidally-influenced fluctuating water and salinity levels.

One of the harshest growing environments for plants is the coastal beaches on the Pacific Ocean, which experience strong winds, salt spray, and thin soils. Beach strawberry, sea pink, and yellow sand verbena are some typical species of the coast.

Marin County has some special endemic plants, meaning they only grow in Marin. The Tiburon mariposa lily and Mt. Tamalpais jewelflower are two rare, endemic plants that grow in only a few locations within the County.

Marin County also has populations of nonnative invasive plant species, including perennial pepperweed, yellow star thistle, vinca, and Scotch and French brooms. These species can change the soil chemistry to prohibit native species from growing, or grow so densely that natives are forced out.

The Marin Chapter of the California Native Plant Society has plant lists for many of the county’s popular trails.

Oak
Oak Tree
Valley Oak
Valley Oak
Valley Oak leaves
Valley Oak leaves
Chapparal
Indian Paintbrush
Redwoods
Redwoods
Redwood leaves
Redwood leaves
Moss on trees
Tree Moss
Blackberries
Blackberries
Berries
Berries
Vinca
Vinca
Vinca leaves
Vinca leaves
Grasses
Grasses
Grasses
Coastal plants
Coastal ground cover
Coastal plants
Marsh plants
Bothin Marsh
Bothin Marsh
Riparian plants
Riparian plants
Streambed
Riparian corridor
Riparian corridor

Fish

No creatures are more symbolic of healthy watersheds than native fish--and in our region, no fish are more indicative of healthy watersheds than coho salmon and steelhead. These salmonids are anadromous fish; they are born and rear in freshwater streams, migrate to the ocean to grow and mature, and return to freshwater to reproduce. Historically, many Marin County creeks supported these fish, but the numbers of native coho and steelhead have dropped dramatically in recent decades.  Coho in particular have disappeared from many of the streams they once inhabited. In west Marin, Chinook salmon, also an andromous fish, are also observed consistently in the Lagunitas Creek system. 

The life cycles of coho salmon and steelhead have many similarities, although the precise schedule, microhabitat requirements, and the amount of time spent in freshwater and the ocean varies. Coho salmon spend their first year in freshwater creeks, migrate to sea where they mature for two years, and return to their native creek to spawn and die. Steelhead have a similar life cycle, but they live in freshwater for one to two years, spend one to four years at sea, and return to spawn as many as four times.  Life cycle and migration timing make steelhead more resilient to change, but both coho salmon and steelhead have relatively specific habitat needs, including:

  • A year-round supply of cool, clean water;
  • Diverse habitat with deep, quiet pools and shallow rocky areas (riffles);
  • Clean spawning cobble and gravels without fine sediment;
  • Relatively stable creek banks;
  • Dense shade canopy from creekside vegetation, to cool water, provide insect habitat, and contribute nutrients;
  • A supply of woody debris from fallen trees and branches;
  • Adequate food supply—primarily insects; and 
  • An abundance of cover—undercut banks, rocks, tree roots, surface turbulence, overhanging creekside vegetation, deep quiet pools, and woody debris—for refuge from predators and heavy storm flows. 

Urban development in our watersheds can disrupt the natural processes that create these habitat qualities.  Increases in paved areas and loss of riparian vegetation can lead to more intense stormflows and simplified stream channels which make it hard for sensitive fish species to survive. Runoff of chemicals from roads, yards, and industrial areas degrades water quality.  Channelized reaches of creeks, lined with concrete, offer little habitat value.  In many places dams and culverts limit fish passage. However, intact baylands, streams running through the valley floor, and upland headwaters still provide critical habitat for fish.

Many other species of fish also inhabit Marin County’s streams, marshes and bays. Common native freshwater species include California roach, threespine stickleback, Sacramento sucker, and prickly sculpin.  The eelgrass beds of Richardson and Tomales Bays are especially rich in fish species.  California bat ray, leopard shark, Pacific herring, and northern anchovy are just a few of the many species documented in these rich tidal baylands.  

The University of California maintains a website of California fish.

Pacific Herring
Pacific Herring
Steelhead
Steelhead
Sac Sucker
Sac Sucker
Steelhead
Steelhead
Baby Steelhead
Baby Steelhead
California Freshwater Shrimp
California Freshwater Shrimp
Prickly Sculpin
Prickly Sculpin
California Roach
California Roach

Reptile & Amphibians

Marin County’s amphibians and many of its reptiles utilize upland terrestrial habitats and are also dependent on the condition of creeks and riparian habitat during a portion or all of their life stages. 

Many amphibian species require diverse, healthy riparian vegetation, good water quality and quantity and structural diversity to survive. Pacific giant salamanders breed in streams and need shady streambanks and woody debris for protection. The California red-legged frog, a threatened species, forage and breed in ponds and streams where emergent plants such as sedges and rushes provide cover and nesting substrates. Special-status northwestern pond turtles live in or near ponds or slow-moving creeks and need suitable rocks or logs for basking sites and underwater retreats. Adaptable Pacific tree frogs utilize streams, ponds, moist woodlands, and developed areas for breeding and year-round habitat.  Foothill Access to adjacent upland habitat or corridors for movement up and downstream is essential for many wildlife species, including amphibians that live in upland habitats but must move to aquatic habitats to breed.  For example, California red-legged frogs and California newts make their way from upland habitats to ponds or slow-flowing streams to breed. Foothill yellow-legged frogs, a close relative of the California red-legged frog, also utilizes perennial, rocky stream; however, it is never found far from water. 

Reptiles including snakes and lizards can be found throughout the upland, valley floor, and bayland habitats. Much less depended on stream corridors, they utilize a variety of habitats. Common reptiles including gopher and garter snake, western fence lizards and alligator lizards can be found anywhere from urban valley floors to ridge tops grasslands.

Red-legged frog
Red-legged frog
California Giant Salamander
California Giant Salamander
Garter Snake
Garter Snake
Gopher Snake
Gopher Snake
Pacific Tree Frog
Pacific Tree Frog
Pond Turtle
Pond Turtle
Yellow-legged frog
Yellow-legged frog

Birds

Over 150 species of birds live and breed in Marin County, including a number of rare and threatened species.  These birds rely on watershed features such as mature riparian trees and snags for roosting and nesting; plentiful fish, amphibians and other small animals for food; and natural tidal flows to maintain rich coastal marsh habitat.

An extraordinary abundance of birds lives in Marin County’s coastal baylands.  The endangered California clapper rail inhabits coastal salt marshes, feeding on invertebrates.  The clapper rail builds its nests on or near the ground in dense marsh vegetation such as pickleweed, cord grass, and gumplant.  The threatened California black rail is usually found in brackish marshes with unrestricted tidal flow where dense cover is available to protect from predation by enemies. The black rail weaves its cup-shaped nest in tall grasses or marsh vegetation.  Hundreds of thousands of other shorebirds and waterfowl migrating along the Pacific Flyway stop for the winter in Richardson Bay, where eelgrass beds provide rich feeding grounds, and the rich feeding grounds of Tomales Bay. 

The upland dense redwood-fir forests support the threatened northern spotted owl, at the southern limit of its range.  Spotted owls inhabit forests with multi-layered canopy cover, using natural cavities or platforms of branches in mature or standing dead trees as nests.  Woody debris on the forest floor provides habitat for the mice, voles, and other small mammals that the owls hunt. Oak woodland habitats provide important habitat for the acorn woodpecker, a highly sociable bird that utilizes dead and dying trees to cache acorns. Its raucous call can be heard throughout the county.  

The riparian corridors of Marin’s lower hills and valleys support some of our more familiar bird species. Red-tailed hawks build nests of sticks, twigs, bark, mosses, and other materials in mature trees along forested drainages.  They hunt a variety of small animals such as snakes, frogs, and rodents. California quail nest on the ground in dense vegetation near streams or other water sources.  The Swainson’s thrush, with its unique upward-spiraling song, can often be heard in well-vegetated riparian habitats.  These birds build their nests in low branches or crotches of willows. They mix leaves, twigs, and mosses with mud to fashion their nests, lining them with dry grasses and other fine plant matter.  Great blue herons, great egrets, and snowy egrets nest in colonies high in large firs, bays, oaks, and eucalyptus, often near shallow water foraging grounds where they stalk fish, crustaceans, and other small animals. Tree swallows frequent riparian corridors and surrounding woodlands, utilizing old tree snags and excavated cavities for nesting, as do wood ducks.

Acorn Woodpecker
Acorn Woodpecker
Blue Heron
Blue Heron
California Quail
California Quail
Clapper Rail
Clapper Rail
Northern Spotted Owl
Ridgeway Rail
Ridgeway Rail
Wood Duck
Wood Duck
Tree Swallow
Tree Swallow
Snowy Egret
Snowy Egret
Egret
Snowy Egret
Red Tail Hawk
Song Sparrow
Song Sparrow

Mammals

Riparian habitat often serves as essential wildlife corridors between habitat patches in an otherwise fragmented, urbanized landscape.  For many animals, it is not only the quality of one patch of habitat, but also the ability to move among multiple habitat patches for example from uplands through the valley floor, that makes survival possible.  Mountain lions, black-tailed deer, coyotes, and other Marin County mammals must be able to move to survive.  Large predators such as the mountain lion need to range widely to find sufficient prey.  Black-tailed deer and other herbivores must follow shifting food sources as vegetation changes with the seasons.  Many mammals such as coyotes disperse from their initial home range to establish their own territories before reaching maturity. 

On a much smaller scale, the endangered salt marsh harvest mouse (weighing a little less than a nickel) also needs a variety of connected habitat types.  This tiny mouse occurs only in San Francisco Bay area salt marshes.  It eats the seeds and stems of salt marsh plants and builds ball-like nests on the ground or in pickleweed. Intact salt marsh habitat typically consists of three broad zones, shaped by the level of inundation and salinity at different elevations. Cordgrass usually dominates the lowest zone; pickleweed occurs in the middle; and a variety of salt-tolerant plants, such as saltgrass, occupy the marsh edges, which then transition into grassland. As tides rise, the salt marsh harvest mouse must move up and inland from its favored pickleweed zone.  In our region, though, most marshes have lost the broad upper edges that could provide refuge. Upper salt marsh zones have been developed, filled, or reshaped into steep levees.  This leaves no place for the mouse to go during high tides.  Hydrologic changes resulting from groundwater pumping and discharge of non-saline sewage are also thought to diminish the pickleweed zone, restricting the salt marsh harvest mouse even further.

Coyote
Coyote
Black-tailed Deer
Black-tailed Deer
Mountain Lion
Mountain Lion
Salt Harvest Mouse
Salt Harvest Mouse
Harbor Seal
Harbor Seal
North American River Otter